Basic Information
Locus ID:
Ftri10G11882
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 83034178 | 83040231 | + | Ftri10G11882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 110,402.55 Da | 49.71 | 63.20 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 520 | 807 | 4.8E-42 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 517 | 813 | 3.14E-81 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 513 | 820 | 3.3E-87 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 520 | 810 | 48.672203 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 521 | 536 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 827 | 848 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_022021178.1 | ubiquitin carboxyl-terminal hydrolase 16 [Helianthus annuus] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251VI23 | Putative zinc finger, MYND-type, Ubiquitin specific protease domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0047521 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology