Basic Information
Locus ID:
Ftri10G10531
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 82738255 | 82748051 | - | Ftri10G10531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 79,752.03 Da | 47.93 | 69.47 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 258 | 410 | 2.41232E-33 | - |
| CDD | cd00821 | PH | 111 | 189 | 7.48655E-6 | - |
| Pfam | PF00169 | PH domain | 109 | 186 | 2.1E-6 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 258 | 401 | 1.5E-27 | IPR000198 |
| SUPERFAMILY | SSF50729 | PH domain-like | 38 | 188 | 1.42E-10 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 254 | 451 | 4.91E-32 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 225 | 450 | 3.2E-41 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 98 | 201 | 2.1E-9 | IPR011993 |
| SMART | SM00324 | RhoGAP_3 | 255 | 446 | 8.9E-28 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 108 | 145 | 7.9897 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 249 | 449 | 28.919331 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 729 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 643 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 608 | 643 | - | - |
| Coils | Coil | Coil | 636 | 670 | - | - |
| Coils | Coil | Coil | 285 | 305 | - | - |
| Coils | Coil | Coil | 685 | 705 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24580.3 | - | 0 |
| RefSeq | XP_022020507.2 | rho GTPase-activating protein REN1 [Helianthus annuus] | 0 |
| F4JQZ3 | Rho GTPase-activating protein REN1 OS=Arabidopsis thaliana OX=3702 GN=REN1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6LEM8 | Rho GTPase-activating protein REN1 OS=Mikania micrantha OX=192012 GN=E3N88_43527 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology