Basic Information
Locus ID:
Ftri10G10352
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Serine threonine-protein kinase-like protein CCR4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5792953 | 5795426 | + | Ftri10G10352 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 84,335.17 Da | 38.08 | 92.40 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 476 | 757 | 3.21455E-87 | - |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 239 | 264 | 4.0E-5 | - |
| Pfam | PF00069 | Protein kinase domain | 471 | 752 | 6.1E-43 | IPR000719 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 116 | 350 | 4.32E-17 | IPR009091 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 452 | 755 | 4.32E-75 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 558 | 764 | 2.1E-52 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 440 | 557 | 4.2E-30 | - |
| Gene3D | G3DSA:2.130.10.30 | - | 75 | 347 | 1.2E-20 | IPR009091 |
| SMART | SM00220 | serkin_6 | 470 | 763 | 1.8E-29 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 470 | 759 | 37.799274 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 603 | 615 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 476 | 498 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47850.1 | CRINKLY4 related 4. | 0 |
| RefSeq | XP_022013244.1 | serine/threonine-protein kinase-like protein CCR4 [Helianthus annuus] | 0 |
| Q9FIJ6 | Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana OX=3702 GN=CCR4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251VDC8 | Putative CRINKLY4 related 4 OS=Helianthus annuus OX=4232 GN=CCR4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology