Basic Information
Locus ID:
Ftri10G07142
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 11419883 | 11421771 | - | Ftri10G07142 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 24,841.65 Da | 49.06 | 59.96 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 32 | 76 | 1.77332E-30 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 33 | 74 | 6.9E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 30 | 87 | 1.08E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 89 | 4.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 34 | 74 | 1.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 34 | 75 | 13.359705 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 49 | 58 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022014000.1 | E3 ubiquitin-protein ligase RNF185 [Helianthus annuus] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251VDK4 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0037551 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology