Basic Information
Locus ID:
Ftri10G04238
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 90476992 | 90479191 | - | Ftri10G04238 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 13,860.10 Da | 48.49 | 94.19 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 26 | 120 | 3.8E-27 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 24 | 121 | 7.85E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 12 | 123 | 5.8E-48 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 26 | 120 | 1.6E-36 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 23 | 121 | 1.4E-39 | IPR005729 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 81 | 95 | 5.6E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 59 | 74 | 5.6E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 24 | 37 | 5.6E-14 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 22 | 121 | 18.033491 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_021988920.1 | 40S ribosomal protein S20-1 [Helianthus annuus] | 0 |
| P49200 | Small ribosomal subunit protein uS10z/uS10x OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2 | 0 | |
| TrEMBL | A0A251TKB6 | Putative 40S ribosomal protein S20 OS=Helianthus annuus OX=4232 GN=RS20 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology