Basic Information
Locus ID:
Ftri10G04211
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 97451869 | 97458835 | - | Ftri10G04211 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 80,967.71 Da | 43.97 | 68.08 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 461 | 738 | 5.71646E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 620 | 655 | 0.0098 | IPR001680 |
| Pfam | PF08513 | LisH | 9 | 34 | 1.2E-5 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 463 | 489 | 0.0065 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 497 | 531 | 0.04 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 538 | 575 | 0.21 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 708 | 738 | 0.28 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 461 | 738 | 9.16E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 436 | 590 | 1.0E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 591 | 738 | 5.7E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 617 | 655 | 6.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 658 | 697 | 0.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 535 | 575 | 0.013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 699 | 738 | 0.022 | IPR001680 |
| SMART | SM00667 | Lish | 7 | 39 | 0.0039 | IPR006594 |
| SMART | SM00320 | WD40_4 | 454 | 489 | 5.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 578 | 614 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 492 | 531 | 3.6E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 542 | 584 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 706 | 738 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 499 | 531 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 7 | 39 | 9.231644 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 469 | 498 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 706 | 738 | 11.049229 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 499 | 531 | 9.361965 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 476 | 490 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 361 | - | - |
| Coils | Coil | Coil | 85 | 105 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021987274.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X2 [Helianthus annuus] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A251TGL3 | Putative LIS1 homology motif, WD40/YVTN repeat-like-containing domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0279751 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology