Basic Information
Locus ID:
Ftri10G03945
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Sec12-like protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 75249877 | 75252316 | + | Ftri10G03945 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 45,174.77 Da | 26.41 | 88.80 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 188 | 213 | 0.086 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 325 | 354 | 0.27 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 53 | 361 | 2.51E-36 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 41 | 362 | 1.8E-65 | IPR015943 |
| SMART | SM00320 | WD40_4 | 184 | 222 | 0.096 | IPR001680 |
| SMART | SM00320 | WD40_4 | 142 | 180 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 313 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 316 | 356 | 0.013 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 231 | 10.007177 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_022019054.1 | SEC12-like protein 2 [Helianthus annuus] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A251VFC5 | Putative quinoprotein alcohol dehydrogenase-like superfamily OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0044681 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology