Basic Information
Locus ID:
Dusal.1248s00003.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
R3H domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1248 | 24545 | 30056 | - | Dusal.1248s00003.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.85 | 70,867.97 Da | 73.67 | 49.06 | -1.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16615 | RING-HC_ZNF598 | 432 | 473 | 3.52748E-15 | IPR041888 |
| SUPERFAMILY | SSF57850 | RING/U-box | 431 | 478 | 1.1E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 408 | 482 | 1.8E-6 | IPR013083 |
| SMART | SM00184 | ring_2 | 527 | 594 | 6.9 | IPR001841 |
| SMART | SM00184 | ring_2 | 432 | 472 | 0.043 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 432 | 473 | 10.541882 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 249 | - | - |
| Coils | Coil | Coil | 287 | 311 | - | - |
| Coils | Coil | Coil | 328 | 351 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47090.2 | zinc ion binding;nucleic acid binding. | 0 |
| RefSeq | XP_002949015.1 | hypothetical protein VOLCADRAFT_120687 [Volvox carteri f. nagariensis] | 0 |
| Q76PD2 | E3 ubiquitin-protein ligase hel2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1223.01 PE=1 SV=2 | 0 | |
| TrEMBL | D8TR81 | RING-type E3 ubiquitin transferase OS=Volvox carteri f. nagariensis OX=3068 GN=VOLCADRAFT_120687 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1248s00003.v1.0 |
| Poaceae | Echinochloa crus-galli | 8 | AH03.1700, AH03.3767, BH01.2823, BH03.4047, CH03.2036 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0578090, gene-QOZ80_7BG0609390 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0122090.1.CDS1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_002817, gene-QYE76_039548, gene-QYE76_039634 ... |
| Poaceae | Oryza coarctata | 7 | Oco02G013000, Oco02G013010, Oco02G013020, Oco06G011720 ... |
| Poaceae | Oryza sativa | 9 | LOC_Os01g38690.1, LOC_Os01g38700.1, LOC_Os01g38710.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G164300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604504 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G011450, Chr11G010870, Chr27G015410, Chr27G015420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G309500 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G156000.1.cds1, TraesCS2B02G181500.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17826 |