Basic Information
Locus ID:
Dusal.1119s00002.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1119 | 23316 | 36091 | - | Dusal.1119s00002.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 40,578.90 Da | 66.04 | 84.25 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 156 | 207 | 1.0E-6 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 154 | 211 | 9.18E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 215 | 3.8E-11 | IPR013083 |
| SMART | SM00744 | ringv_2 | 155 | 208 | 7.5E-9 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 148 | 214 | 15.284536 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 37 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03180.5 | - | 0 |
| RefSeq | XP_002957503.1 | hypothetical protein VOLCADRAFT_98620 [Volvox carteri f. nagariensis] | 0 |
| TrEMBL | D8UFU5 | RING-CH-type domain-containing protein OS=Volvox carteri f. nagariensis OX=3068 GN=VOLCADRAFT_98620 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology