Basic Information
Locus ID:
Dusal.1115s00001.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1115 | 2000 | 38268 | + | Dusal.1115s00001.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 76,849.97 Da | 52.52 | 72.25 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 220 | 257 | 5.5E-4 | IPR001810 |
| Pfam | PF04457 | MJ1316 RNA cyclic group end recognition domain | 10 | 91 | 4.4E-7 | IPR040459 |
| Pfam | PF00400 | WD domain, G-beta repeat | 490 | 510 | 0.17 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 364 | 400 | 8.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 326 | 359 | 0.11 | IPR001680 |
| SUPERFAMILY | SSF81383 | F-box domain | 219 | 272 | 1.7E-10 | IPR036047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 296 | 521 | 9.34E-33 | IPR036322 |
| Gene3D | G3DSA:1.20.1280.50 | - | 210 | 286 | 1.8E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 287 | 521 | 1.0E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 322 | 359 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 473 | 510 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 362 | 400 | 2.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 440 | 2.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 369 | 409 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 329 | 368 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 369 | 404 | 8.966513 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 723 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 723 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002951701.1 | hypothetical protein VOLCADRAFT_92304 [Volvox carteri f. nagariensis] | 0 |
| TrEMBL | D8TZB2 | WD_REPEATS_REGION domain-containing protein OS=Volvox carteri f. nagariensis OX=3068 GN=VOLCADRAFT_92304 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26987 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22578 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002039 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g110800, BVRB_5g110810 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg28100, Sbi_jg32435 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7325 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015748 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl53780, Sgl53785, Sgl59043, Sgl59048 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006812, gene:ENSEOMG00000022168 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2AG0010700, CQ.Regalona.r1.3AG0015290 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30146250 |
| Apiaceae | Apium graveolens | 1 | Ag8G00689 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G001720 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712861 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1767.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G21468 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G49040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011186m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g35950.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g061410.2N, BniB04g061420.2N, BniB07g008560.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2407 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2546 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g01280 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0074s00025.v1.0, Dusal.1115s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g18560 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.393 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033367 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb7G33581, Lb7G33582, Lb7G33899, Lb7G33920 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2105, BH02.2171, CH02.2332 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0021780, gene-QOZ80_1BG0071730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0267340.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053426 |
| Poaceae | Oryza coarctata | 1 | Oco01G013100 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g39380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G171900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603071, Pt_Chr0603098 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr05G016920, Chr08G009050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G361500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG030960, gene_TRIDC3BG035530 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G204600.3, TraesCS3B02G236700.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb160220_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29429 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8107 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.258, evm.TU.LG02.259, evm.TU.LG09.1496 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g09950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.777 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28585 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21414 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1599 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.502 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000915 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14401 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19268 |
| Salicaceae | Populus euphratica | 3 | populus_peu28383, populus_peu29836, populus_peu29949 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633292 |
| Solanaceae | Solanum chilense | 1 | SOLCI006253400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014520 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14190_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0860 |
| Zosteraceae | Zostera marina | 2 | Zosma05g14010.v3.1, Zosma05g14020.v3.1 |