Basic Information
Locus ID:
Dusal.1106s00003.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1106 | 45535 | 55860 | - | Dusal.1106s00003.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 46,863.67 Da | 32.71 | 85.10 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 11 | 320 | 1.51454E-76 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 128 | 165 | 3.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 201 | 234 | 6.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 47 | 81 | 1.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 244 | 279 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 86 | 123 | 9.4E-9 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 335 | 1.14E-74 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 322 | 1.0E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 84 | 123 | 4.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 39 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 42 | 81 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 282 | 320 | 330.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 279 | 2.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 196 | 235 | 2.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 126 | 165 | 6.5E-10 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 91 | 123 | 10.838322 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 247 | 281 | 12.341042 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 49 | 90 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 203 | 244 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 91 | 132 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 203 | 234 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 133 | 166 | 14.451798 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 247 | 288 | 15.855363 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 133 | 166 | 11.945589 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 49 | 81 | 10.469233 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 152 | 166 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 110 | 124 | 1.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 152 | 166 | 1.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 266 | 280 | 1.6E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_042917248.1 | uncharacterized protein CHLRE_13g565850v5 [Chlamydomonas reinhardtii] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7S3VHQ4 | Coatomer subunit alpha OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS1389 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology