Basic Information
Locus ID:
Dusal.0930s00003.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
E3 ubiquitin ligase BIG
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold930 | 65526 | 91406 | + | Dusal.0930s00003.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.62 | 103,117.71 Da | 64.25 | 59.28 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 969 | 1012 | 3.14518E-16 | - |
| Pfam | PF13639 | Ring finger domain | 969 | 1012 | 6.9E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 969 | 1015 | 2.05E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 927 | 1016 | 6.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 970 | 1011 | 1.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 970 | 1012 | 12.710573 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 703 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 763 | 790 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 754 | 790 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 347 | - | - |
| Coils | Coil | Coil | 1016 | 1018 | - | - |
| Coils | Coil | Coil | 127 | 158 | - | - |
| Coils | Coil | Coil | 729 | 749 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_013893741.1 | hypothetical protein MNEG_13242 [Monoraphidium neglectum] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7S3R6Z0 | RING-type domain-containing protein (Fragment) OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS19680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 4 | COCNU_07G002090, COCNU_09G004210, COCNU_10G001500 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706422 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.868.V1.1 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g09710 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0110s00028.v1.0, Dusal.0930s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate08g15870, gene.Thate08g15890 |
| Poaceae | Echinochloa crus-galli | 1 | AH03.2740 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0528150, gene-QOZ80_6BG0482140 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0499860.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007420, gene-QYE76_007421 |
| Poaceae | Oryza coarctata | 1 | Oco17G010440 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g36500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G255800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0700057, Pt_Chr0700062 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G014190, Chr11G008080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G519600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG048290, gene_TRIDC5BG052220 |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G326800.1.cds1, TraesCS5A02G326900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb319810_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35250 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32193 |