Basic Information
Locus ID:
Dusal.0888s00003.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
DEAD-box ATP-dependent RNA helicase 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold888 | 24515 | 50396 | - | Dusal.0888s00003.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 73,350.51 Da | 45.78 | 77.41 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00268 | DEADc | 120 | 258 | 2.87183E-69 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 284 | 344 | 1.4E-5 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 125 | 245 | 1.1E-34 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 126 | 343 | 5.29E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 261 | 376 | 4.5E-12 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 109 | 260 | 3.0E-53 | IPR027417 |
| SMART | SM00487 | ultradead3 | 61 | 279 | 4.8E-35 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 121 | 257 | 27.692547 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 667 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 668 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 127 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26742.3 | DEAD box RNA helicase (RH3). | 0 |
| RefSeq | XP_042914830.1 | uncharacterized protein CHLRE_17g727700v5 [Chlamydomonas reinhardtii] | 0 |
| Q0DM51 | DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0827700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6S8LJW3 | RNA helicase OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS13127 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology