Basic Information
Locus ID:
Dusal.0866s00006.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
PHD and RING finger domain-containing protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold866 | 72761 | 89002 | - | Dusal.0866s00006.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 145,604.23 Da | 53.98 | 53.50 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15543 | PHD_RSF1 | 776 | 821 | 2.07713E-18 | - |
| Pfam | PF00628 | PHD-finger | 777 | 823 | 1.8E-11 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 765 | 825 | 8.64E-18 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 762 | 845 | 1.8E-19 | IPR013083 |
| SMART | SM00249 | PHD_3 | 776 | 822 | 8.0E-13 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 774 | 824 | 10.4156 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 777 | 821 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1022 | 1036 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 771 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1094 | 1115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1067 | 1115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 938 | 952 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1257 | 1287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1271 | 1285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 1000 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 831 | 853 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 883 | 1042 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1067 | 1093 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 449 | - | - |
| Coils | Coil | Coil | 29 | 49 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_042924810.1 | uncharacterized protein CHLRE_05g235400v5 [Chlamydomonas reinhardtii] | 0 |
| E7EZF3 | E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio OX=7955 GN=uhrf1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7S3R2K2 | BAH domain-containing protein (Fragment) OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS15550 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9458 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_1020, gene_22895, gene_7838 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033754 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g144700 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20195, Sbi_jg44291 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17727 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00021410, GOSA_00021411, GOSA_00021412 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63885, Sgl68373 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014836, gene:ENSEOMG00000022800 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0009520, CQ.Regalona.r1.2BG0010050 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30022160, pistato.v30222520 |
| Apiaceae | Apium graveolens | 3 | Ag1G01335, Ag6G00334, Ag9G00488 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G005850, COCNU_11G011740 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103699157, gene-LOC103719046, gene-LOC120110853 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.181.V1.1, AsparagusV1_05.3155.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri5G02703, Ftri8G10451 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G01460.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10019872m.g.v1.0, Thhalv10022520m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g00610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g061780.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1812 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1888 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g03670 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0253s00014.v1.0, Dusal.0866s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g16600 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2246 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.408 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00023332, Pov_00023333, Pov_00034366, Pov_00041413 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33460 |
| Poaceae | Echinochloa crus-galli | 2 | AH07.671, BH07.799 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0104700, gene-QOZ80_2BG0158090 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0535640.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021251 |
| Poaceae | Oryza coarctata | 2 | Oco03G005200, Oco04G004730 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g09920.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G069800, gene-BS78_04G070000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202209 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G033370 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G341600 |
| Poaceae | Triticum dicoccoides | 17 | gene_TRIDC3AG075090, gene_TRIDC3AG075100 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS3A02G530300.1.cds1, TraesCS4A02G324900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb206240_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-33507, nbis-gene-44107 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12363, Zma_g15108 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.1394, evm.TU.LG05.1917, evm.TU.LG16.1091 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g07460 |
| Rhizophoraceae | Bruguiera sexangula | 8 | evm.TU.36567.1, evm.TU.45229.1, evm.TU.45229.2 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23084, nbisL1-mrna-2318, nbisL1-mrna-2631 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10399, nbisL1-mrna-11668 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14785, nbisL1-mrna-3047 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000013l.179, evm.TU.utg000019l.96 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001944, Maker00006668 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12071, nbisL1-mrna-7085 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15841 |
| Salicaceae | Populus euphratica | 1 | populus_peu24422 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641362 |
| Solanaceae | Solanum chilense | 1 | SOLCI003618100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020445 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_4646, gene_4811 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2325, TC02G3239 |
| Zosteraceae | Zostera marina | 1 | Zosma03g04350.v3.1 |