Basic Information
Locus ID:
Dusal.0840s00001.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold840 | 3887 | 11422 | + | Dusal.0840s00001.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 10,750.94 Da | 36.25 | 83.40 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 15 | 51 | 8.7E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 56 | 94 | 4.7E-13 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 95 | 1.2E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 97 | 1.6E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 55 | 94 | 2.2E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 12 | 51 | 1.0E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 62 | 97 | 16.374657 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 19 | 51 | 12.235586 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 97 | 18.395145 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 19 | 51 | 14.819399 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 38 | 52 | 6.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 81 | 95 | 6.6E-5 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| Q21215 | Small ribosomal subunit protein RACK1 OS=Caenorhabditis elegans OX=6239 GN=rack-1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8J6RR98 | WD40 repeat domain-containing protein OS=Trichocoleus sp. FACHB-832 OX=2692875 GN=H6F53_23185 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g128360 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl04549, Sgl09595, Sgl15470, Sgl22341, Sgl27592, Sgl44438 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000012172 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10023689m.g.v1.0, Thhalv10024116m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB05g063820.2N |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0526s00007.v1.0, Dusal.0840s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g03560 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr0G013900 |
| Poaceae | Zea mays | 4 | Zm00001eb054750_P001, Zm00001eb356040_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31254, nbis-gene-45313 |