Basic Information
Locus ID:
Dusal.0779s00006.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold779 | 61280 | 84567 | + | Dusal.0779s00006.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.66 | 104,832.63 Da | 61.28 | 67.11 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 182 | 208 | 5.1E-5 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 269 | 312 | 3.0E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 836 | 856 | 0.45 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 112 | 156 | 3.2E-7 | IPR002885 |
| SUPERFAMILY | SSF81901 | HCP-like | 54 | 214 | 1.86E-5 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 710 | 969 | 4.4E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 264 | 436 | 2.2E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 39 | 255 | 2.5E-30 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 271 | 303 | 0.0025 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 113 | 144 | 0.002 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 179 | 213 | 10.007725 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 144 | 178 | 9.898111 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 303 | 339 | 10.106377 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 109 | 143 | 9.350046 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 268 | 302 | 9.88715 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 631 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 940 | 961 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 403 | - | - |
| Coils | Coil | Coil | 924 | 944 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TrEMBL | A0A7S3R0Q4 | PPR_long domain-containing protein OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS13261 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14930 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14177 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030219 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27582, Sbi_jg32939 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7719 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012164 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71543, Sgl75119 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004487, gene:ENSEOMG00000035057 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0017710, CQ.Regalona.r1.7BG0019230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30271930 |
| Apiaceae | Apium graveolens | 1 | Ag4G01600 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G002890 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702861 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.228.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G29753 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09650.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020113m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07980.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g055220.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1279 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1307 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g15790 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0779s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g33050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1379 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006352 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08536 |
| Poaceae | Echinochloa crus-galli | 2 | CH01.3982, CH02.3616 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9BG0695360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0466520.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003812 |
| Poaceae | Oryza coarctata | 1 | Oco01G021030 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g01210.1, LOC_Os12g01210.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G241400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103646, Pt_Chr0705186 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr07G022510 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G268900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG025900, gene_TRIDC5BG027020 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G155800.1, TraesCS5B02G154011.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb156000_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40101, nbis-gene-54547 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17516, Zma_g25436 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1116, evm.TU.LG20.1439 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g36010 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.841 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4358 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18783 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9957 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000009l.326 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21859 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5890 |
| Salicaceae | Populus euphratica | 1 | populus_peu25797 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630102 |
| Solanaceae | Solanum chilense | 1 | SOLCI000383600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107031406, gene-LOC107031500 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6768 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0644 |
| Zosteraceae | Zostera marina | 1 | Zosma01g18650.v3.1 |