Basic Information
Locus ID:
Dusal.0696s00003.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Short Name:
RDR6
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold696 | 60764 | 80921 | - | Dusal.0696s00003.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 71,129.60 Da | 45.91 | 79.20 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05183 | RNA dependent RNA polymerase | 53 | 232 | 1.0E-39 | IPR007855 |
| Pfam | PF05183 | RNA dependent RNA polymerase | 16 | 49 | 1.5E-5 | IPR007855 |
| Pfam | PF05183 | RNA dependent RNA polymerase | 250 | 405 | 3.4E-39 | IPR007855 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 622 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 624 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19910.1 | RNA-dependent RNA polymerase family protein. | 0 |
| RefSeq | XP_013905477.1 | RNA-dependent RNA polymerase 1 [Monoraphidium neglectum] | 0 |
| Q0DXS3 | Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0D2K899 | RNA-dependent RNA polymerase OS=Monoraphidium neglectum OX=145388 GN=MNEG_1492 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology