Basic Information
Locus ID:
Dusal.0606s00004.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Short Name:
EIF5A
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold606 | 79886 | 83157 | + | Dusal.0606s00004.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 17,866.77 Da | 25.46 | 73.66 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 86 | 160 | 2.16569E-25 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 158 | 8.7E-24 | IPR020189 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 86 | 159 | 3.03E-18 | IPR012340 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 15 | 93 | 3.16E-25 | IPR008991 |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 85 | 2.4E-42 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 86 | 164 | 8.6E-24 | - |
| SMART | SM01376 | eIF_5a_2 | 85 | 158 | 3.6E-26 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 17 | 157 | 7.6E-36 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 161 | 2.3E-61 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | - | IPR019769 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 0 |
| RefSeq | XP_013895729.1 | Eukaryotic translation initiation factor 5A-1 [Monoraphidium neglectum] | 0 |
| P56336 | Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum OX=4113 GN=EIF5A4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7S3QUJ3 | Eukaryotic translation initiation factor 5A OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS8750 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology