Basic Information
Locus ID:
Dusal.0552s00009.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold552 | 113386 | 126914 | - | Dusal.0552s00009.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 42,375.38 Da | 31.47 | 93.74 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 209 | 339 | 5.49949E-63 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 99 | 184 | 9.5E-18 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 222 | 330 | 6.7E-31 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 25 | 175 | 1.44E-8 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 97 | 352 | 1.68E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 90 | 4.5E-15 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 91 | 202 | 8.2E-27 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 203 | 369 | 1.7E-59 | IPR027417 |
| SMART | SM00490 | helicmild6 | 249 | 330 | 2.9E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 42 | 212 | 4.4E-32 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 208 | 369 | 26.786587 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 54 | 197 | 17.180014 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 23 | 51 | 11.128675 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 143 | 151 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_002958883.1 | eukaryotic initiation factor [Volvox carteri f. nagariensis] | 0 |
| Q10I26 | Eukaryotic initiation factor 4A-III homolog B OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3B PE=1 SV=1 | 0 | |
| TrEMBL | A0A7S3R1Q8 | RNA helicase OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS15097 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology