Basic Information
Locus ID:
Dusal.0392s00004.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
E3 RING-finger protein, member of the UBC2 RAD6 epistasis group. Associates to the E2 ubiquitin conjugating enzyme UBC2 RAD6 to form the UBC2-RAD18 ubiquitin ligase complex involved in postreplicative repair (PRR) of damaged DNA
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold392 | 63402 | 73376 | - | Dusal.0392s00004.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 112,308.56 Da | 80.76 | 54.95 | -1.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 29 | 72 | 2.2E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 21 | 95 | 1.7E-16 | - |
| Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 370 | 400 | 2.7E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 104 | 4.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 29 | 72 | 3.0E-8 | IPR001841 |
| SMART | SM00734 | c2hc_5 | 373 | 396 | 1.4E-5 | IPR006642 |
| SMART | SM00513 | sap_9 | 481 | 515 | 1.4E-6 | IPR003034 |
| ProSiteProfiles | PS50800 | SAP motif profile. | 481 | 515 | 11.104737 | IPR003034 |
| ProSiteProfiles | PS51908 | Zinc finger UBZ4-type profile. | 373 | 400 | 11.741803 | IPR006642 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 29 | 73 | 12.622055 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 44 | 53 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 894 | 923 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 793 | 843 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 894 | 912 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 702 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 794 | 833 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 962 | 988 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 702 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 988 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 591 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 180 | - | - |
| Coils | Coil | Coil | 591 | 690 | - | - |
| Coils | Coil | Coil | 444 | 467 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002947415.1 | hypothetical protein VOLCADRAFT_116452 [Volvox carteri f. nagariensis] | 0 |
| Q6FPI4 | Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=RAD18 PE=3 SV=1 | 0 | |
| TrEMBL | A0A7S3R8T4 | RING-type domain-containing protein (Fragment) OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS20565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0392s00004.v1.0 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.Contig12.26, evm.TU.Contig12.9 |