Basic Information
Locus ID:
Dusal.0390s00006.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold390 | 90818 | 131788 | - | Dusal.0390s00006.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 62,552.43 Da | 43.17 | 74.72 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 24 | 90 | 1.24775E-12 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 226 | 290 | 2.5E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 126 | 196 | 3.4E-16 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 24 | 83 | 2.2E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 10 | 119 | 1.02E-18 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 219 | 306 | 4.48E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 122 | 207 | 8.33E-26 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 211 | 298 | 2.2E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 4 | 118 | 9.2E-16 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 119 | 210 | 3.4E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 225 | 292 | 2.5E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 125 | 198 | 2.3E-21 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 23 | 90 | 1.5E-14 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 224 | 296 | 14.436429 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 22 | 94 | 12.168061 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 124 | 202 | 17.114126 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_005643314.1 | RNA-binding domain-containing protein [Coccomyxa subellipsoidea C-169] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A250WPR6 | RRM domain-containing protein OS=Chlamydomonas eustigma OX=1157962 GN=CEUSTIGMA_g108.t1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology