Basic Information
Locus ID:
Dusal.0378s00007.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold378 | 159656 | 190085 | - | Dusal.0378s00007.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 96,688.64 Da | 33.22 | 82.38 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 449 | 481 | 0.065 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 214 | 249 | 0.099 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 44 | 81 | 0.0048 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 671 | 704 | 0.12 | IPR001680 |
| SUPERFAMILY | SSF69322 | Tricorn protease domain 2 | 8 | 292 | 1.1E-30 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 332 | 704 | 5.22E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 153 | 1.8E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 156 | 289 | 2.0E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 575 | 763 | 1.2E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 296 | 568 | 2.0E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 160 | 202 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 484 | 524 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 666 | 705 | 0.0032 | IPR001680 |
| SMART | SM00320 | WD40_4 | 443 | 481 | 6.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 43 | 82 | 3.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 433 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 40 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 581 | 622 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 385 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 83 | 121 | 74.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 249 | 6.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 624 | 663 | 10.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 490 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 673 | 704 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 492 | 533 | 10.842632 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 7 | 49 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 492 | 526 | 8.544697 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 673 | 704 | 8.861059 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 217 | 251 | 9.520146 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 50 | 81 | 9.54651 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 217 | 251 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 50 | 81 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 401 | 432 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 450 | 484 | 9.177421 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 468 | 482 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 869 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 842 | 856 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_042928570.1 | uncharacterized protein CHLRE_01g032150v5 [Chlamydomonas reinhardtii] | 0 |
| TrEMBL | A0A835YIE2 | WD_REPEATS_REGION domain-containing protein OS=Edaphochlamys debaryana OX=47281 GN=HYH03_000288 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12290 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_25378, gene_3993 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014908, Ah019684 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g111430 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31789, Sbi_jg57529 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25213 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026622 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl45239, Sgl50022, Sgl54127, Sgl54133, Sgl59450 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015092, gene:ENSEOMG00000032252 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0011490, CQ.Regalona.r1.3AG0011550 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30219370 |
| Apiaceae | Apium graveolens | 3 | Ag10G00618, Ag3G00987, Ag7G01074 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G006790, COCNU_05G006000, scaffold001054G000110 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701749, gene-LOC103720237, gene-LOC120107370 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.3302.V1.1, AsparagusV1_03.225.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G10205, Ftri18G02235 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G46280.1, AT2G46290.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004580m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g16660.v2.2, Sp4g28330.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g067630.2N, BniB04g007230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0360 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0376 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g18070 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0378s00007.v1.0, Dusal.0670s00006.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g01870 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2345, evm.TU.LG03.927 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00016657, Pov_00021972, Pov_00031734, Pov_00038063 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09494, Lb2G14375, Lb2G14377 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.316, CH03.465 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0556070, gene-QOZ80_7BG0587010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0370630.1 |
| Poaceae | Oryza coarctata | 2 | Oco21G008310, Oco22G009580 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g16660.2, LOC_Os08g21660.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G222500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304402, Pt_Chr0304462 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G020880, Chr12G017140, Chr22G010680 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G867500, Tel4E01G236200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG071850, gene_TRIDC2BG077770 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G511400.1, TraesCS2B02G539500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb117170_P001, Zm00001eb300780_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-35748, nbis-gene-51850 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g4755, Zma_g6000 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2302, evm.TU.LG23.530 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g10300 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.169, evm.TU.Scaffold_9_RagTag.142 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11138 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9750 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10621, nbisL1-mrna-7558 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.105 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013770 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9127 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15356 |
| Salicaceae | Populus euphratica | 2 | populus_peu07274, populus_peu21271 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627110 |
| Solanaceae | Solanum chilense | 1 | SOLCI004187400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004968 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1135 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2929, TC07G0892 |
| Zosteraceae | Zostera marina | 2 | Zosma03g34390.v3.1, Zosma05g07000.v3.1 |