Basic Information
Locus ID:
Dusal.0308s00013.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold308 | 188320 | 190869 | - | Dusal.0308s00013.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 43,651.07 Da | 50.09 | 93.38 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 251 | 358 | 5.6E-11 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 135 | 378 | 1.93E-29 | IPR036770 |
| SUPERFAMILY | SSF81383 | F-box domain | 79 | 138 | 8.5E-7 | IPR036047 |
| Gene3D | G3DSA:1.25.40.20 | - | 57 | 391 | 1.8E-36 | IPR036770 |
| SMART | SM00248 | ANK_2a | 246 | 279 | 180.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 135 | 164 | 2300.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 330 | 359 | 2.2E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 283 | 323 | 150.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 210 | 239 | 1400.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 174 | 203 | 4300.0 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 330 | 362 | 11.08682 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 330 | 359 | 9.754822 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14365.1 | XB3 ortholog 4 in Arabidopsis thaliana. | 0 |
| Q9FPH0 | Putative E3 ubiquitin-protein ligase XBAT34 OS=Arabidopsis thaliana OX=3702 GN=XBAT34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7S3R6X0 | ANK_REP_REGION domain-containing protein OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS19420 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 14 | Dusal.0002s00084.v1.0, Dusal.0047s00008.v1.0 ... |