Basic Information
Locus ID:
Dusal.0255s00013.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
Nucleoporin Nup120/160
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold255 | 269004 | 299360 | - | Dusal.0255s00013.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 101,509.72 Da | 30.95 | 77.39 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 36 | 98 | 1.17026E-10 | IPR002048 |
| Pfam | PF00400 | WD domain, G-beta repeat | 486 | 521 | 0.006 | IPR001680 |
| Pfam | PF13499 | EF-hand domain pair | 37 | 98 | 5.9E-9 | IPR002048 |
| Pfam | PF00400 | WD domain, G-beta repeat | 580 | 614 | 0.0031 | IPR001680 |
| Pfam | PF11715 | Nucleoporin Nup120/160 | 362 | 480 | 2.0E-7 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 710 | 859 | 5.96E-6 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 128 | 310 | 1.37E-13 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 272 | 622 | 6.59E-49 | IPR036322 |
| SUPERFAMILY | SSF47473 | EF-hand | 31 | 99 | 1.24E-13 | IPR011992 |
| Gene3D | G3DSA:2.130.10.10 | - | 701 | 793 | 1.1E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 417 | 640 | 9.0E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 127 | 315 | 6.7E-11 | IPR015943 |
| Gene3D | G3DSA:1.10.238.10 | - | 22 | 111 | 9.5E-14 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 316 | 416 | 3.6E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 438 | 477 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 389 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 742 | 781 | 3.0 | IPR001680 |
| SMART | SM00054 | efh_1 | 73 | 101 | 12.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 36 | 64 | 0.04 | IPR002048 |
| SMART | SM00320 | WD40_4 | 660 | 725 | 5.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 163 | 202 | 56.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 481 | 521 | 6.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 305 | 0.0025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 347 | 0.0084 | IPR001680 |
| SMART | SM00320 | WD40_4 | 118 | 160 | 440.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 575 | 614 | 1.6E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 357 | 392 | 10.548323 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 274 | 314 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 496 | 530 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 445 | 486 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 32 | 67 | 12.198088 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 69 | 104 | 9.99435 | IPR002048 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 582 | 623 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 582 | 615 | 9.678328 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 357 | 398 | 13.917108 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 508 | 522 | - | IPR019775 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 82 | 94 | - | IPR018247 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 376 | 390 | - | IPR019775 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 45 | 57 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_042917180.1 | uncharacterized protein CHLRE_13g562800v5 [Chlamydomonas reinhardtii] | 0 |
| TrEMBL | A0A7S0WPJ8 | Calmodulin OS=Chlamydomonas leiostraca OX=1034604 GN=CLEI1391_LOCUS7689 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0255s00013.v1.0, Dusal.0471s00005.v1.0 |