Basic Information
Locus ID:
Dusal.0251s00001.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
Middle domain of eukaryotic initiation factor 4G (eIF4G)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold251 | 28845 | 59788 | + | Dusal.0251s00001.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 100,588.86 Da | 53.00 | 67.14 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12381 | RRM4_I_PABPs | 519 | 595 | 3.00516E-41 | - |
| CDD | cd14014 | STKc_PknB_like | 15 | 298 | 8.23965E-45 | - |
| Pfam | PF00069 | Protein kinase domain | 14 | 294 | 4.3E-32 | IPR000719 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 521 | 590 | 8.9E-19 | IPR000504 |
| Pfam | PF02854 | MIF4G domain | 802 | 921 | 7.3E-16 | IPR003890 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 7 | 310 | 3.69E-50 | IPR011009 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 515 | 608 | 4.3E-28 | IPR035979 |
| SUPERFAMILY | SSF48371 | ARM repeat | 760 | 921 | 1.61E-23 | IPR016024 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 99 | 9.4E-9 | - |
| Gene3D | G3DSA:1.25.40.180 | - | 791 | 923 | 2.9E-30 | IPR016021 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 102 | 340 | 4.5E-38 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 485 | 612 | 5.8E-29 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 520 | 593 | 7.3E-27 | IPR000504 |
| SMART | SM00220 | serkin_6 | 12 | 299 | 1.9E-28 | IPR000719 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 519 | 597 | 18.495615 | IPR000504 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 12 | 304 | 32.414223 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 359 | - | - |
| Coils | Coil | Coil | 491 | 511 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34110.1 | poly(A) binding protein 2. Putative poly-A binding protein. Member of a gene family .Expressed in stele and root meristem and post-fertilization ovules.Member of the class II family of PABP proteins. | 0 |
| RefSeq | XP_003056327.1 | predicted protein, partial [Micromonas pusilla CCMP1545] | 0 |
| P31209 | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7S1FA94 | PABP (Fragment) OS=Noctiluca scintillans OX=2966 GN=NSCI0253_LOCUS26960 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 22 | Dusal.0024s00037.v1.0, Dusal.0024s00038.v1.0 ... |