Basic Information
Locus ID:
Dusal.0246s00012.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Short Name:
CDC20
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold246 | 213035 | 225934 | - | Dusal.0246s00012.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.95 | 42,284.45 Da | 44.92 | 79.39 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 98 | 361 | 2.58335E-53 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 116 | 170 | 3.1E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 236 | 276 | 7.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 326 | 360 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 195 | 232 | 1.1E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 93 | 362 | 8.85E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 80 | 364 | 1.6E-102 | IPR015943 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 3.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 322 | 361 | 2.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 108 | 147 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 276 | 4.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 150 | 187 | 3.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 319 | 23.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 157 | 189 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 232 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 115 | 147 | 9.493783 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 157 | 189 | 9.071966 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 122 | 156 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 329 | 362 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 329 | 362 | 10.23196 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 232 | 11.101955 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 134 | 148 | 8.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 174 | 188 | 8.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 219 | 233 | 8.6E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_042920826.1 | uncharacterized protein CHLRE_09g399911v5 [Chlamydomonas reinhardtii] | 0 |
| Q54MZ3 | Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum OX=44689 GN=cdc20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A250XDM5 | ANAPC4_WD40 domain-containing protein OS=Chlamydomonas eustigma OX=1157962 GN=CEUSTIGMA_g8295.t1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology