Basic Information
Locus ID:
Dusal.0231s00016.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold231 | 277674 | 312770 | + | Dusal.0231s00016.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.74 | 119,684.63 Da | 60.88 | 74.39 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 811 | 851 | 4.88563E-11 | - |
| CDD | cd18793 | SF2_C_SNF | 908 | 1034 | 2.46453E-32 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 21 | 227 | 9.6E-39 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 811 | 851 | 1.9E-7 | IPR018957 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 48 | 1061 | 4.09E-29 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 804 | 857 | 3.06E-13 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 17 | 153 | 6.73E-16 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 882 | 1085 | 4.1E-37 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 755 | 878 | 1.4E-14 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 10 | 161 | 1.6E-17 | IPR038718 |
| SMART | SM00184 | ring_2 | 811 | 851 | 4.5E-6 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 911 | 1070 | 9.049965 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 811 | 852 | 12.769585 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 826 | 835 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1055 | 1074 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 623 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 782 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 784 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 625 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1055 | 1113 | - | - |
| Coils | Coil | Coil | 628 | 648 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40770.1 | zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding. | 0 |
| RefSeq | XP_005851240.1 | hypothetical protein CHLNCDRAFT_137960 [Chlorella variabilis] | 0 |
| Q7TPQ3 | E3 ubiquitin-protein ligase SHPRH OS=Mus musculus OX=10090 GN=Shprh PE=1 SV=1 | 0 | |
| TrEMBL | A0A7S3R998 | SNF2-rel_dom domain-containing protein (Fragment) OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS21438 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Dusal.0231s00016.v1.0.