Basic Information
Locus ID:
Dusal.0152s00021.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes. Mediates the snRNAs 3' cleavage. Mediates recruitment of cytoplasmic dynein to the nuclear envelope, probably as component of the INT complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold152 | 323393 | 342669 | + | Dusal.0152s00021.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 62,210.23 Da | 42.17 | 84.04 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16291 | INTS11-like_MBL-fold | 6 | 204 | 9.79903E-114 | IPR041897 |
| Pfam | PF07521 | Zn-dependent metallo-hydrolase RNA specificity domain | 379 | 437 | 1.7E-11 | IPR011108 |
| Pfam | PF00753 | Metallo-beta-lactamase superfamily | 15 | 190 | 1.5E-19 | IPR001279 |
| Pfam | PF10996 | Beta-Casp domain | 245 | 365 | 4.0E-24 | IPR022712 |
| SUPERFAMILY | SSF56281 | Metallo-hydrolase/oxidoreductase | 4 | 451 | 2.86E-138 | IPR036866 |
| Gene3D | G3DSA:3.60.15.10 | - | 9 | 421 | 4.8E-134 | IPR036866 |
| Gene3D | G3DSA:3.40.50.10890 | - | 213 | 393 | 4.8E-134 | - |
| SMART | SM01027 | Beta_Casp_2 | 245 | 365 | 1.0E-35 | IPR022712 |
| SMART | SM00849 | Lactamase_B_5a | 16 | 210 | 5.2E-17 | IPR001279 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 505 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01730.1 | cleavage and polyadenylation specificity factor 73 kDa subunit-II. a homolog of cleavage and polyadenylation specificity factor that plays an essential role in the development of female gametophyte and embryo | 0 |
| RefSeq | XP_050886495.1 | cleavage and polyadenylation specificity factor subunit 3-II [Pisum sativum] | 0 |
| Q503E1 | Integrator complex subunit 11 OS=Danio rerio OX=7955 GN=cpsf3l PE=2 SV=1 | 0 | |
| TrEMBL | A0A7S3QU97 | Lactamase_B domain-containing protein OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS8381 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9731 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5399 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003441 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39238, Sbi_jg54555 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11091 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00019632, GOSA_00019634 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl15128, Sgl20281, Sgl35697, Sgl35770, Sgl41081 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006204, gene:ENSEOMG00000021036 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0009710, CQ.Regalona.r1.5BG0010130 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30218360, pistato.v30218370 |
| Apiaceae | Apium graveolens | 2 | Ag4G02647, Ag8G01881 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G002150 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706807 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G23988 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G01730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005303m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g13180.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g009470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0129 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0135 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g04430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0152s00021.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05150 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1237 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002414 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G14200, Lb2G14217 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.1841, BH03.2077, CH03.2190, CH03.2191 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0534520, gene-QOZ80_6BG0487650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0478980.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004961, gene-QYE76_004980, gene-QYE76_004986 |
| Poaceae | Oryza coarctata | 2 | Oco17G004350, Oco18G004270 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g23380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G176000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702284, Pt_Chr0702302 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G010500, Chr11G011860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G339500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG032900, gene_TRIDC5BG034730 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G203800.1, TraesCS5B02G202500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb159740_P004 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-30905, nbis-gene-57746 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30275 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG13.1186, evm.TU.LG21.856, evm.TU.LG21.857 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g06310 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.248 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26470 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3468 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17567 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.153 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004643 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11570 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2705 |
| Salicaceae | Populus euphratica | 1 | populus_peu21214 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613683 |
| Solanaceae | Solanum chilense | 1 | SOLCI003966400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017849 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17150_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3639 |
| Zosteraceae | Zostera marina | 1 | Zosma01g23270.v3.1 |