Basic Information
Locus ID:
Dusal.0152s00012.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Short Name:
RPL18
Description:
60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold152 | 136174 | 140907 | - | Dusal.0152s00012.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.26 | 37,708.72 Da | 38.06 | 86.55 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 176 | 231 | 4.1E-19 | IPR021131 |
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 21 | 159 | 9.3E-45 | IPR021131 |
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 307 | 339 | 2.5E-8 | IPR021131 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 72 | 160 | 2.83E-16 | IPR036227 |
| Gene3D | G3DSA:3.100.10.10 | - | 174 | 267 | 2.7E-15 | - |
| Gene3D | G3DSA:3.100.10.10 | - | 289 | 339 | 2.1E-10 | - |
| Gene3D | G3DSA:3.100.10.10 | - | 61 | 173 | 2.9E-39 | - |
| Gene3D | G3DSA:3.100.10.10 | - | 20 | 57 | 1.1E-6 | - |
| ProSitePatterns | PS01106 | Ribosomal protein L18e signature. | 95 | 112 | - | IPR021132 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27850.1 | Ribosomal protein L18e/L15 superfamily protein. | 0 |
| RefSeq | XP_002948325.1 | component of cytosolic 80S ribosome and 60S large subunit [Volvox carteri f. nagariensis] | 0 |
| Q940B0 | Large ribosomal subunit protein eL18x OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1 | 0 | |
| TrEMBL | A0A7S1ANY4 | Ribosomal_L18e/L15P domain-containing protein OS=Noctiluca scintillans OX=2966 GN=NSCI0253_LOCUS34797 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology