Basic Information
Locus ID:
Dusal.0142s00003.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
U4 snRNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold142 | 49603 | 52647 | + | Dusal.0142s00003.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 18,441.73 Da | 35.97 | 82.28 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 113 | 151 | 1.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 68 | 108 | 3.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 27 | 64 | 4.8E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 19 | 152 | 1.01E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 16 | 166 | 2.7E-43 | IPR015943 |
| SMART | SM00320 | WD40_4 | 67 | 108 | 5.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 25 | 64 | 1.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 111 | 152 | 1.0E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 32 | 73 | 16.356636 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 74 | 108 | 9.520146 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 32 | 66 | 12.472858 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 118 | 151 | 9.177421 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 118 | 151 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 74 | 117 | 11.811761 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 51 | 65 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 51 | 65 | 5.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 95 | 109 | 5.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 139 | 153 | 5.0E-6 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05720.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | NP_178635.1 | Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana] | 0 |
| TrEMBL | A0A2G8JXJ6 | Putative U4/U6 small nuclear ribonucleoprotein Prp4 OS=Stichopus japonicus OX=307972 GN=BSL78_22657 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Dusal.0142s00003.v1.0.