Basic Information
Locus ID:
Dusal.0083s00005.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold83 | 58058 | 69205 | + | Dusal.0083s00005.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.55 | 39,521.97 Da | 56.12 | 73.78 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14280 | UBA1_Rad23_like | 143 | 181 | 1.30888E-19 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 71 | 8.19859E-18 | - |
| CDD | cd14281 | UBA2_Rad23_like | 350 | 386 | 3.81412E-15 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 70 | 5.4E-12 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 147 | 179 | 4.1E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 350 | 386 | 1.9E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 263 | 318 | 3.8E-20 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 338 | 392 | 1.18E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 87 | 4.1E-13 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 127 | 183 | 6.24E-13 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 261 | 324 | 2.22E-17 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 252 | 318 | 4.4E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 137 | 184 | 5.5E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 341 | 392 | 1.4E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 72 | 1.0E-12 | - |
| SMART | SM00727 | CBM | 261 | 304 | 4.4E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 351 | 388 | 1.0E-4 | IPR015940 |
| SMART | SM00165 | uba_6 | 144 | 181 | 6.9E-9 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 392 | 3.1E-92 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 77 | 15.056899 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 348 | 389 | 12.305923 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 142 | 182 | 13.342098 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 377 | 392 | 7.9E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 289 | 311 | 7.9E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 362 | 376 | 7.9E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 345 | 361 | 7.9E-28 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 128 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_042921938.1 | uncharacterized protein CHLRE_08g366400v5 [Chlamydomonas reinhardtii] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A7S3QN99 | Ubiquitin receptor RAD23 OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS2499 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology