Basic Information
Locus ID:
Dusal.0078s00023.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold78 | 570786 | 610051 | - | Dusal.0078s00023.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 92,988.82 Da | 64.58 | 67.71 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 595 | 864 | 8.30918E-68 | - |
| CDD | cd00590 | RRM_SF | 140 | 208 | 4.07719E-12 | - |
| CDD | cd16646 | mRING-HC-C2H2C4_MDM2_like | 505 | 546 | 1.38083E-9 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 594 | 627 | 3.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 763 | 803 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 636 | 669 | 1.0E-5 | IPR001680 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 206 | 2.4E-8 | IPR000504 |
| Pfam | PF00400 | WD domain, G-beta repeat | 679 | 714 | 0.07 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 722 | 756 | 2.4E-6 | IPR001680 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 504 | 551 | 2.2E-8 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 587 | 864 | 3.05E-64 | IPR036322 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 138 | 242 | 2.01E-15 | IPR035979 |
| Gene3D | G3DSA:2.130.10.10 | - | 678 | 864 | 9.1E-42 | IPR015943 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 496 | 557 | 1.9E-12 | IPR013083 |
| Gene3D | G3DSA:3.30.70.330 | - | 71 | 224 | 5.0E-13 | IPR012677 |
| Gene3D | G3DSA:2.130.10.10 | - | 579 | 676 | 9.6E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 631 | 669 | 4.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 672 | 714 | 0.06 | IPR001680 |
| SMART | SM00320 | WD40_4 | 759 | 803 | 3.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 588 | 627 | 2.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 717 | 756 | 9.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 826 | 864 | 180.0 | IPR001680 |
| SMART | SM00360 | rrm1_1 | 139 | 209 | 3.2E-11 | IPR000504 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 637 | 672 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 791 | 812 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 637 | 672 | 12.051043 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 595 | 629 | 16.824492 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 595 | 629 | 13.817396 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 724 | 765 | 15.688272 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 724 | 759 | 12.499222 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 834 | 864 | 9.599237 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 680 | 723 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 213 | 12.458003 | IPR000504 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 834 | 864 | 9.806668 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 790 | 804 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 743 | 757 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 656 | 670 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 790 | 804 | 2.8E-6 | IPR020472 |
| PRINTS | PR01217 | Proline rich extensin signature | 231 | 248 | 5.6E-9 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 743 | 757 | 2.8E-6 | IPR020472 |
| PRINTS | PR01217 | Proline rich extensin signature | 214 | 230 | 5.6E-9 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 614 | 628 | 2.8E-6 | IPR020472 |
| PRINTS | PR01217 | Proline rich extensin signature | 91 | 107 | 5.6E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 250 | 275 | 5.6E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 320 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0078s00023.v1.0, Dusal.0562s00008.v1.0 ... |