Basic Information
Locus ID:
Dusal.0073s00017.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold73 | 404150 | 422755 | - | Dusal.0073s00017.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 53,993.03 Da | 55.47 | 70.33 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 94 | 135 | 2.70926E-23 | - |
| CDD | cd00200 | WD40 | 227 | 485 | 1.44664E-69 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 329 | 364 | 4.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 369 | 404 | 4.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 224 | 255 | 8.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 291 | 324 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 451 | 485 | 0.005 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 409 | 445 | 7.9E-8 | IPR001680 |
| Pfam | PF04564 | U-box domain | 91 | 160 | 1.3E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 78 | 164 | 2.36E-28 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 219 | 485 | 5.13E-69 | IPR036322 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 163 | 3.6E-29 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 388 | 485 | 5.9E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 202 | 387 | 8.5E-48 | IPR015943 |
| SMART | SM00320 | WD40_4 | 449 | 485 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 255 | 1.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 445 | 1.3E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 367 | 404 | 4.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 327 | 364 | 4.2E-6 | IPR001680 |
| SMART | SM00504 | Ubox_2 | 93 | 156 | 1.4E-29 | IPR003613 |
| SMART | SM00320 | WD40_4 | 258 | 295 | 8.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 296 | 324 | 140.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 456 | 485 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 374 | 407 | 9.968326 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 225 | 264 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 374 | 413 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 414 | 446 | 11.312864 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 456 | 485 | 10.495596 | - |
| ProSiteProfiles | PS51698 | U-box domain profile. | 89 | 163 | 35.588017 | IPR003613 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 225 | 256 | 9.151057 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 294 | 333 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 334 | 373 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 414 | 446 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 334 | 367 | 9.230148 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 351 | 365 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 311 | 325 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 391 | 405 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 242 | 256 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 432 | 446 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 351 | 365 | 3.5E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 242 | 256 | 3.5E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 432 | 446 | 3.5E-9 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 92 | - | - |
| Coils | Coil | Coil | 46 | 86 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_001703257.1 | uncharacterized protein CHLRE_03g178550v5 [Chlamydomonas reinhardtii] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7S1T0G1 | U-box domain-containing protein (Fragment) OS=Tetraselmis chuii OX=63592 GN=TCHU04912_LOCUS16367 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg36079, jg38114, jg8075, jg9833 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10362, gene_6514 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005623, Ah028389 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_4g077010, BVRB_7g164050, BVRB_9g211050 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17277, Sbi_jg26632, Sbi_jg33930, Sbi_jg61901 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15149, Seu_jg532 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011842, GOSA_00015445 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl73932, Sgl73937, Sgl77444, Sgl79881 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000007517, gene:ENSEOMG00000012313 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0007020, CQ.Regalona.r1.4BG0007220 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30013850, pistato.v30090300 |
| Apiaceae | Apium graveolens | 3 | Ag11G03080, Ag2G01176, Ag7G00094 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G015180, scaffold000218G000010 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103698710, gene-LOC103722515, gene-LOC103722520 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_09.1609.V1.1, AsparagusV1_09.1610.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G21083, Ftri11G11503, Ftri12G27566, Ftri9G28589 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G07360.1, AT5G18320.1, AT5G18330.1, AT5G18340.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10015380m.g.v1.0, Thhalv10020790m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp3g06300.v2.2, Sp6g25970.v2.2, Sp6g25980.v2.2 ... |
| Brassicaceae | Brassica nigra | 4 | BniB01g056550.2N, BniB02g044480.2N, BniB03g024060.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G2199, Ceq08G1535 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G2318, Cgl08G1565 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g01370 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0073s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g22260, gene.Thate09g00170 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6410, nbisL1-mrna-9774 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2121, evm.TU.LG04.1436 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G28692, Lb5G28735 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.1776, AH09.643, BH07.1763, BH09.591, CH07.1614 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0131000, gene-QOZ80_2BG0186350 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0160480.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_043438, gene-QYE76_046692 |
| Poaceae | Oryza coarctata | 4 | Oco03G010350, Oco04G010480, Oco07G003200, Oco08G003500 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g28720.1, LOC_Os04g28100.1, LOC_Os09g07490.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G136100, gene-BS78_06G053000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0306700, Pt_Chr0503725 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G011560, Chr13G012540, Chr15G013280, Chr23G015600 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G497100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG039890, gene_TRIDC2BG043020 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G276400.1, TraesCS2B02G294100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb241150_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-20974, nbis-gene-7974 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13521, Zma_g21106 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG03.1088, evm.TU.LG08.754, evm.TU.LG12.646 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g03500 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_1_RagTag.379, evm.TU.Scaffold_2_RagTag.1870 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-12225, nbisL1-mrna-20689, nbisL1-mrna-20801 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-12159, nbisL1-mrna-2008, nbisL1-mrna-4446 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-10796, nbisL1-mrna-13839, nbisL1-mrna-21504 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000003l.957, evm.TU.utg000006l.1004 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00005437, Maker00009239, Maker00011315, Maker00013419 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-10539, nbisL1-mrna-12870, nbisL1-mrna-13941 ... |
| Rhizophoraceae | Rhizophora mangle | 5 | nbisL1-mrna-15660, nbisL1-mrna-16314, nbisL1-mrna-4571 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu16023, populus_peu19452, populus_peu30858 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609854, gene-LOC132613836 |
| Solanaceae | Solanum chilense | 3 | SOLCI000845400, SOLCI000845500, SOLCI005949900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107016825, gene-LOC107017532, gene-LOC107031669 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.2211_chr01_+, gene_4777 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G0777, TC02G1519, TC02G3136 |
| Zosteraceae | Zostera marina | 1 | Zosma04g01260.v3.1 |