Basic Information
Locus ID:
Dusal.0067s00013.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
DDB1- and CUL4-associated factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold67 | 311971 | 350379 | - | Dusal.0067s00013.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 95,987.17 Da | 57.09 | 67.80 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 34 | 68 | 4.3E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 31 | 789 | 8.74E-41 | IPR036322 |
| SUPERFAMILY | SSF48452 | TPR-like | 371 | 469 | 8.41E-14 | IPR011990 |
| Gene3D | G3DSA:2.130.10.10 | - | 130 | 348 | 4.8E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 700 | 830 | 3.0E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 25 | 125 | 1.6E-13 | IPR015943 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 367 | 527 | 2.1E-16 | IPR011990 |
| SMART | SM00320 | WD40_4 | 147 | 188 | 0.037 | IPR001680 |
| SMART | SM00320 | WD40_4 | 30 | 69 | 4.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 74 | 115 | 6.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 751 | 790 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 705 | 748 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 244 | 8.6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 37 | 69 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 37 | 69 | 10.15287 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 844 | 873 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 643 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 631 | - | - |
| Coils | Coil | Coil | 479 | 517 | - | - |
| Coils | Coil | Coil | 557 | 581 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35140.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_042919932.1 | uncharacterized protein CHLRE_10g425050v5 [Chlamydomonas reinhardtii] | 0 |
| Q8N5D0 | WD and tetratricopeptide repeats protein 1 OS=Homo sapiens OX=9606 GN=WDTC1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7S3QT00 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS7302 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10793, jg10794, jg6141 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1474 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023747 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g008160 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg4152, Sbi_jg49651, Sbi_jg49653 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5605 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001009 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl10548 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000014894, gene:ENSEOMG00000014912 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0014930 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30041650 |
| Apiaceae | Apium graveolens | 1 | Ag3G00062 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G007350, scaffold006700G000060 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701791, gene-LOC103711005 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1883.V1.1, AsparagusV1_03.1885.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G09047 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012761m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32550.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g051090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1229 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1334 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g12330 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0067s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g04670 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1560 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026722 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03718 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4722, CH01.5298, Contig181.145 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0236560, gene-QOZ80_3BG0291480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0406310.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037494 |
| Poaceae | Oryza coarctata | 2 | Oco05G004880, Oco06G005000 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g08830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G455500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107708 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G002500, Chr07G008730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G504800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG000190, gene_TRIDC4BG051620 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G002000.2, TraesCS4B02G303100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb006570_P001, Zm00001eb401530_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2681, nbis-gene-4269 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1914, Zma_g4271 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1872, evm.TU.LG06.483 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g30000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.939 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18949 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18054 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6772 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.719 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010674 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13045 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10184 |
| Salicaceae | Populus euphratica | 3 | populus_peu18065, populus_peu32206, populus_peu32207 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627600 |
| Solanaceae | Solanum chilense | 1 | SOLCI004763800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015575 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8669 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2990 |
| Zosteraceae | Zostera marina | 1 | Zosma06g17020.v3.1 |