Basic Information
Locus ID:
Dusal.0062s00026.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
zinc finger (C3HC4 type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold62 | 564651 | 591700 | + | Dusal.0062s00026.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 38,807.47 Da | 55.10 | 80.36 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 12 | 55 | 2.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 6 | 58 | 1.46E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 204 | 3.0E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 13 | 54 | 6.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 13 | 55 | 12.194218 | IPR001841 |
| Coils | Coil | Coil | 246 | 273 | - | - |
| Coils | Coil | Coil | 151 | 202 | - | - |
| Coils | Coil | Coil | 101 | 142 | - | - |
| Coils | Coil | Coil | 296 | 327 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_009147226.1 | E3 ubiquitin-protein ligase RFI2 [Brassica rapa] | 0 |
| TrEMBL | A0A7S3QZP8 | RING-type domain-containing protein (Fragment) OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS12489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30120510 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1093 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1134 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0062s00026.v1.0 |
| Poaceae | Echinochloa crus-galli | 1 | CH01.3664 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031833, gene-QYE76_031838 |