Basic Information
Locus ID:
Dusal.0054s00008.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold54 | 109491 | 120134 | + | Dusal.0054s00008.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.40 | 127,421.58 Da | 68.23 | 49.73 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16646 | mRING-HC-C2H2C4_MDM2_like | 1357 | 1398 | 3.66217E-13 | - |
| Pfam | PF13634 | Nucleoporin FG repeat region | 1049 | 1135 | 1.3E-9 | IPR025574 |
| Pfam | PF13634 | Nucleoporin FG repeat region | 346 | 436 | 0.0058 | IPR025574 |
| Pfam | PF13634 | Nucleoporin FG repeat region | 785 | 871 | 4.4E-10 | IPR025574 |
| Pfam | PF13634 | Nucleoporin FG repeat region | 956 | 1042 | 1.5E-12 | IPR025574 |
| Pfam | PF13634 | Nucleoporin FG repeat region | 228 | 324 | 4.6E-7 | IPR025574 |
| Pfam | PF13634 | Nucleoporin FG repeat region | 1148 | 1244 | 1.3E-11 | IPR025574 |
| Pfam | PF13634 | Nucleoporin FG repeat region | 458 | 548 | 7.4E-9 | IPR025574 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 1354 | 1403 | 4.7E-7 | - |
| Pfam | PF13634 | Nucleoporin FG repeat region | 691 | 778 | 9.5E-13 | IPR025574 |
| Pfam | PF13634 | Nucleoporin FG repeat region | 589 | 684 | 2.6E-9 | IPR025574 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1347 | 1407 | 5.2E-12 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_042923388.1 | uncharacterized protein CHLRE_06g255050v5 [Chlamydomonas reinhardtii] | 0 |
| TrEMBL | A0A7S3VQ52 | ANK_REP_REGION domain-containing protein OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS14595 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 21 | Dusal.0047s00017.v1.0, Dusal.0054s00006.v1.0 ... |