Basic Information
Locus ID:
Dusal.0033s00012.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
progesterone receptor binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold33 | 300278 | 323876 | + | Dusal.0033s00012.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 62,955.91 Da | 66.51 | 65.17 | -1.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 14 | 56 | 1.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 14 | 60 | 5.55E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 142 | 1.2E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 15 | 55 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 15 | 56 | 11.825393 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 462 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 369 | - | - |
| Coils | Coil | Coil | 178 | 216 | - | - |
| Coils | Coil | Coil | 87 | 139 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_042925548.1 | uncharacterized protein CHLRE_03g145487v5 [Chlamydomonas reinhardtii] | 0 |
| TrEMBL | A0A2K3DVB3 | RING-type domain-containing protein OS=Chlamydomonas reinhardtii OX=3055 GN=CHLRE_03g145487v5 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg55313 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14352 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0021820 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009637m.g.v1.0 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0033s00012.v1.0 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_016725, gene-QYE76_027791, gene-QYE76_027792 ... |
| Poaceae | Oryza coarctata | 1 | Oco12G002140 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g05200.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402251 |
| Poaceae | Thinopyrum elongatum | 5 | Tel3E01G225000, Tel3E01G226000, Tel3E01G226400 ... |
| Poaceae | Triticum aestivum | 15 | TraesCS3A02G309200.1.cds1, TraesCS3A02G309300.1.cds1 ... |