Basic Information
Locus ID:
Dusal.0028s00016.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Short Name:
PF15
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold28 | 257385 | 295543 | + | Dusal.0028s00016.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 71,432.76 Da | 47.90 | 76.58 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 7 | 294 | 1.28464E-63 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 209 | 5.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 131 | 167 | 4.1E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 42 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 85 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 125 | 0.0045 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 288 | 2.65E-66 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 90 | 3.1E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 91 | 174 | 1.3E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 175 | 308 | 9.6E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 212 | 250 | 0.23 | IPR001680 |
| SMART | SM00320 | WD40_4 | 128 | 167 | 5.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 88 | 125 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 170 | 209 | 2.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 46 | 85 | 3.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3 | 43 | 2.6E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 177 | 218 | 15.588017 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 10 | 52 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 177 | 212 | 12.499222 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 135 | 176 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 135 | 168 | 9.941962 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 95 | 128 | 10.07378 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 53 | 87 | 8.913786 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 53 | 94 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 95 | 134 | 13.68318 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 112 | 126 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 196 | 210 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 196 | 210 | 5.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 30 | 44 | 5.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 112 | 126 | 5.3E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 617 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23430.2 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_020878153.1 | uncharacterized protein LOC9307403 isoform X3 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q8H0T9 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A7S3QZX1 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS13019 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology