Basic Information
Locus ID:
Dusal.0010s00026.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
structural constituent of ribosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold10 | 564236 | 572035 | + | Dusal.0010s00026.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 23,136.20 Da | 34.04 | 64.45 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 144 | 190 | 6.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 194 | 2.36E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 197 | 5.2E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 190 | 10.600894 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09130.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024387151.1 | uncharacterized protein LOC112287851 [Physcomitrium patens] | 0 |
| TrEMBL | L8HGF8 | Ubiquitin domain containing protein OS=Acanthamoeba castellanii str. Neff OX=1257118 GN=ACA1_071480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0010s00026.v1.0 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0530200, gene-QOZ80_6BG0484110 |
| Poaceae | Oryza coarctata | 1 | Oco11G010410 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G011340, Chr21G011510 |
| Poaceae | Triticum aestivum | 1 | TraesCS7B02G235500.1.cds1 |