Basic Information
Locus ID:
Dusal.0008s00002.v1.0
Species & Taxonomic ID:
Dunaliella salina & 3046
Genome Assembly:
v1.0
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold8 | 21275 | 34679 | + | Dusal.0008s00002.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 50,269.10 Da | 43.68 | 79.64 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 363 | 461 | 2.55664E-52 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 5 | 135 | 4.4E-14 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 364 | 461 | 5.1E-17 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 180 | 210 | 1.9E-8 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 66 | 461 | 1.04E-42 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 233 | 5.3E-11 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 318 | 464 | 5.5E-41 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 72 | 146 | 7.7E-7 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 173 | 262 | 6.4E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 6 | 71 | 7.7E-7 | IPR038718 |
| SMART | SM00184 | ring_2 | 181 | 223 | 3.4E-5 | IPR001841 |
| SMART | SM00490 | helicmild6 | 378 | 461 | 1.3E-21 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 181 | 224 | 10.114045 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 354 | 466 | 12.665009 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 196 | 205 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 268 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20010.2 | - | 0 |
| RefSeq | XP_042928805.1 | uncharacterized protein CHLRE_01g046237v5 [Chlamydomonas reinhardtii] | 0 |
| Q9LHE4 | Helicase-like transcription factor CHR27 OS=Arabidopsis thaliana OX=3702 GN=CHR27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7S3VJ56 | Helicase C-terminal domain-containing protein OS=Dunaliella tertiolecta OX=3047 GN=DTER00134_LOCUS4239 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology