Basic Information
Locus ID:
Contig926_1.9
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein-only RNase P
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig926_1 | 38792 | 41608 | - | Contig926_1.9 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.98 | 65,163.12 Da | 54.30 | 75.51 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16953 | Protein-only RNase P | 315 | 541 | 3.5E-59 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 55 | 273 | 8.4E-66 | IPR033443 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 64 | 542 | 1.4E-188 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 331 | 507 | 1.4E-188 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 185 | 219 | 8.506026 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 593 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16650.1 | proteinaceous RNase P 2. | 9.52E-149 |
| RefSeq | XP_034595849.1 | proteinaceous RNase P 2 [Setaria viridis] | 0 |
| Q680B9 | Proteinaceous RNase P 2 OS=Arabidopsis thaliana OX=3702 GN=PRORP2 PE=1 SV=1 | 9.16E-148 | |
| TrEMBL | A0A4U6V5H0 | ribonuclease P OS=Setaria viridis OX=4556 GN=SEVIR_5G472200v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology