Basic Information
Locus ID:
Contig866.38
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig866 | 313087 | 316152 | + | Contig866.38 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 56,916.83 Da | 64.26 | 65.28 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 443 | 483 | 6.08882E-19 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 441 | 488 | 1.6E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 443 | 489 | 1.1E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 419 | 494 | 8.0E-15 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 444 | 483 | 10.600894 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 96 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 5.5E-95 |
| RefSeq | XP_022685551.1 | uncharacterized protein LOC101779219 [Setaria italica] | 1.76E-246 |
| TrEMBL | A0A0A9DTT5 | RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 7.58E-248 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology