Basic Information
Locus ID:
Contig80_1.2
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig80_1 | 138451 | 139738 | - | Contig80_1.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 42,861.16 Da | 47.19 | 99.04 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 70 | 6.5E-5 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 126 | 172 | 7.3E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 100 | 382 | 3.23E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 93 | 364 | 5.4E-53 | IPR032675 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 4.66E-31 |
| RefSeq | XP_025812959.1 | leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 [Panicum hallii] | 1.12E-213 |
| TrEMBL | A0A2T8JDC7 | LRRNT_2 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_4G189700 PE=4 SV=1 | 2.53E-212 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology