Basic Information
Locus ID:
Contig522.28
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig522 | 663814 | 669347 | + | Contig522.28 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 91,099.62 Da | 44.02 | 96.33 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14798 | RX-CC_like | 5 | 130 | 4.37284E-13 | IPR038005 |
| CDD | cd14798 | RX-CC_like | 192 | 311 | 2.4908E-11 | IPR038005 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 671 | 761 | 3.7E-10 | IPR000535 |
| Pfam | PF00069 | Protein kinase domain | 382 | 646 | 2.0E-46 | IPR000719 |
| Pfam | PF18052 | Rx N-terminal domain | 8 | 97 | 5.1E-15 | IPR041118 |
| Pfam | PF18052 | Rx N-terminal domain | 191 | 274 | 4.6E-13 | IPR041118 |
| SUPERFAMILY | SSF49354 | PapD-like | 669 | 787 | 1.23E-13 | IPR008962 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 370 | 660 | 1.91E-66 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 473 | 667 | 3.4E-48 | - |
| Gene3D | G3DSA:1.20.5.4130 | - | 191 | 299 | 2.5E-18 | - |
| Gene3D | G3DSA:1.20.5.4130 | - | 8 | 117 | 3.0E-19 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 362 | 455 | 2.5E-21 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 668 | 793 | 3.9E-14 | IPR013783 |
| SMART | SM00220 | serkin_6 | 382 | 653 | 2.4E-30 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 670 | 791 | 14.756068 | IPR000535 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 382 | 657 | 33.813488 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 513 | 525 | - | IPR008271 |
| Coils | Coil | Coil | 66 | 86 | - | - |
| Coils | Coil | Coil | 799 | 799 | - | - |
| Coils | Coil | Coil | 292 | 312 | - | - |
| Coils | Coil | Coil | 215 | 235 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00960.1 | Protein kinase superfamily protein. | 3.16E-43 |
| RefSeq | XP_004980339.2 | uncharacterized protein LOC101759286 [Setaria italica] | 0 |
| O23082 | Cysteine-rich receptor-like protein kinase 44 OS=Arabidopsis thaliana OX=3702 GN=CRK44 PE=3 SV=2 | 3.07E-42 | |
| TrEMBL | A0A368S5L1 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_8G086000v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | BH05.3525, CH04.920, CH05.3680, Contig522.28 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_5AG0380720, gene-QOZ80_5BG0439080 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0225170.1, HORVU.MOREX.r3.7HG0748020.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_036867, gene-QYE76_036876, gene-QYE76_036884 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_06G051900, gene-BS78_08G093000 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401585 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G157900, Tel7E01G940400 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG004390, gene_TRIDC7AG075260 ... |
| Poaceae | Triticum aestivum | 20 | TraesCS3A02G073900.1, TraesCS3D02G522300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb164620_P001 |