Basic Information
Locus ID:
Contig522.18
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig522 | 426062 | 449717 | - | Contig522.18 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 247,067.63 Da | 43.06 | 81.97 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 581 | 658 | 3.46022E-7 | - |
| CDD | cd01647 | RT_LTR | 886 | 1066 | 6.24861E-78 | - |
| CDD | cd14703 | bZIP_plant_RF2 | 2067 | 2117 | 4.25058E-14 | IPR044759 |
| CDD | cd09279 | RNase_HI_like | 1205 | 1328 | 1.10669E-44 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 904 | 1060 | 6.1E-20 | IPR000477 |
| Pfam | PF13456 | Reverse transcriptase-like | 1209 | 1328 | 1.3E-23 | IPR002156 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1090 | 1148 | 3.7E-10 | IPR041577 |
| Pfam | PF17921 | Integrase zinc binding domain | 1459 | 1509 | 5.6E-7 | IPR041588 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 846 | 1160 | 1.22E-92 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1204 | 1326 | 3.92E-20 | IPR012337 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1523 | 1630 | 3.41E-17 | IPR012337 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 847 | 991 | 1.6E-59 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 1071 | 1119 | 1.8E-6 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 929 | 1066 | 1.6E-59 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 562 | 685 | 2.0E-11 | IPR021109 |
| Gene3D | G3DSA:3.30.420.10 | - | 1574 | 1664 | 2.0E-14 | IPR036397 |
| Gene3D | G3DSA:1.10.340.70 | - | 1419 | 1508 | 1.1E-12 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1206 | 1336 | 9.5E-29 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 1518 | 1573 | 2.9E-9 | IPR036397 |
| SMART | SM00338 | brlzneu | 2066 | 2125 | 6.0E-5 | IPR004827 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1201 | 1330 | 11.944695 | IPR002156 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1927 | 1946 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 716 | 748 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1886 | 1913 | - | - |
| Coils | Coil | Coil | 2088 | 2136 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G58110.1 | Basic-leucine zipper (bZIP) transcription factor family protein. | 3.11E-30 |
| RefSeq | XP_052161258.1 | uncharacterized protein LOC127778677 isoform X1 [Oryza glaberrima] | 6.91E-295 |
| P0CT41 | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1 | 1.06E-27 | |
| TrEMBL | Q2QTQ7 | Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g18840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |