Basic Information
Locus ID:
Contig522.11
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PPR repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig522 | 369901 | 374506 | - | Contig522.11 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 95,276.12 Da | 55.03 | 62.12 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 407 | 419 | 0.1 | IPR011659 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 167 | 464 | 1.24E-14 | - |
| Gene3D | G3DSA:2.120.10.30 | - | 176 | 348 | 1.1E-8 | IPR011042 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 734 | 766 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 822 | 843 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 740 | 754 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 811 | 843 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21670.1 | 4.03E-47 | |
| RefSeq | XP_052149423.1 | uncharacterized protein LOC127767970 [Oryza glaberrima] | 1.05E-196 |
| TrEMBL | A0A0E0KCY0 | Protein TolB OS=Oryza punctata OX=4537 PE=4 SV=1 | 1.06E-196 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology