Basic Information
Locus ID:
Contig522.1
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
disease resistance protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig522 | 82555 | 83807 | - | Contig522.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 33,950.76 Da | 55.55 | 105.61 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 179 | 290 | 9.7E-22 | IPR002182 |
| Pfam | PF18052 | Rx N-terminal domain | 11 | 99 | 3.1E-10 | IPR041118 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 157 | 295 | 3.19E-28 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 160 | 300 | 3.9E-27 | IPR027417 |
| Gene3D | G3DSA:1.20.5.4130 | - | 10 | 114 | 2.5E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 269 | 283 | 3.0E-8 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 195 | 210 | 3.0E-8 | - |
| Coils | Coil | Coil | 37 | 57 | - | - |
| Coils | Coil | Coil | 125 | 145 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G59620.2 | - | 1.63E-14 |
| RefSeq | XP_039823045.1 | disease resistance protein RGA5-like isoform X2 [Panicum virgatum] | 1.76E-151 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 4.65E-78 | |
| TrEMBL | A0A8T0PA31 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8NG185107 PE=3 SV=1 | 3.51E-148 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology