Basic Information
Locus ID:
Contig328.86
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig328 | 873082 | 878512 | + | Contig328.86 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 105,581.46 Da | 47.00 | 83.29 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00432 | Ribosomal_L18_L5e | 817 | 912 | 1.56234E-14 | - |
| Pfam | PF00646 | F-box domain | 20 | 48 | 1.3E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 327 | 359 | 7.3E-6 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 509 | 586 | 1.8E-5 | IPR013187 |
| SUPERFAMILY | SSF53137 | Translational machinery components | 815 | 911 | 4.45E-13 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 327 | 382 | 4.71E-9 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 75 | 1.7E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 314 | 394 | 8.8E-6 | - |
| Gene3D | G3DSA:3.30.420.100 | - | 800 | 913 | 2.3E-11 | - |
| SMART | SM00256 | fbox_2 | 20 | 59 | 1.5E-5 | IPR001810 |
| SMART | SM00256 | fbox_2 | 327 | 364 | 2.2 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 410 | 597 | 1.9E-15 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 798 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22450.1 | Ribosomal L18p/L5e family protein. | 2.44E-64 |
| RefSeq | XP_025823818.1 | uncharacterized protein LOC112899532 isoform X1 [Panicum hallii] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 9.15E-14 | |
| TrEMBL | A0A1E5V1D8 | F-box domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0020020 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology