Basic Information
Locus ID:
Contig3144.1
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig3144 | 9458 | 12694 | + | Contig3144.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.22 | 7,550.40 Da | 55.49 | 75.07 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53300.3 | ubiquitin-conjugating enzyme 10. Encodes a ubiquitin conjugating enzyme. | 4.38E-9 |
| RefSeq | XP_020082022.1 | ubiquitin-conjugating enzyme E2-17 kDa-like [Ananas comosus] | 7.44E-8 |
| P35133 | Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana OX=3702 GN=UBC10 PE=1 SV=1 | 8.39E-8 | |
| TrEMBL | A0A452ZCU0 | UBC core domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 1.64E-6 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 4 | Ag2G02313, Ag3G02413, Ag6G01684, Ag8G00600 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0211 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0256 |
| Poaceae | Echinochloa crus-galli | 3 | BH02.940, BH06.2074, Contig3144.1 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG074700, gene_TRIDC6BG021190 |