Basic Information
Locus ID:
Contig309.97
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig309 | 750687 | 760121 | - | Contig309.97 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.81 | 168,621.77 Da | 58.16 | 68.38 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 1176 | 1215 | 1.10564E-15 | - |
| CDD | cd04301 | NAT_SF | 1370 | 1431 | 1.83273E-4 | - |
| Pfam | PF16135 | Tify domain binding domain | 1097 | 1137 | 8.5E-12 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1159 | 1216 | 1.62E-13 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1362 | 1451 | 1.91E-7 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1165 | 1233 | 1.3E-16 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 1351 | 1464 | 2.8E-5 | - |
| SMART | SM00249 | PHD_3 | 1175 | 1216 | 1.8E-11 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1217 | 1271 | 14.0 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1310 | 1468 | 11.01956 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1173 | 1218 | 10.050699 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1176 | 1215 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 636 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1519 | 1551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 871 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1011 | 1035 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 955 | 980 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 952 | 980 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 761 | 784 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 760 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1527 | 1551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 656 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 840 | 854 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1020 | 1035 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 92 | - | - |
| Coils | Coil | Coil | 1275 | 1295 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 4.81E-164 |
| RefSeq | XP_025793296.1 | uncharacterized protein LOC112874279 isoform X1 [Panicum hallii] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 2.22E-100 | |
| TrEMBL | A0A2T7C154 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G086600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology